##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane4_Index13_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20198926	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.21193295128662	33.0	31.0	34.0	31.0	34.0
2	32.43804581491115	34.0	31.0	34.0	31.0	34.0
3	32.45043271112534	34.0	31.0	34.0	31.0	34.0
4	36.097943375801265	37.0	35.0	37.0	35.0	37.0
5	35.99282125198142	37.0	35.0	37.0	35.0	37.0
6	35.9756964305924	37.0	35.0	37.0	35.0	37.0
7	35.96469945976335	37.0	35.0	37.0	35.0	37.0
8	35.93016821785475	37.0	35.0	37.0	35.0	37.0
9	37.63454502481964	39.0	37.0	39.0	35.0	39.0
10-14	37.87446713751018	39.2	37.2	39.4	35.0	39.4
15-19	38.831515942976374	40.0	38.0	41.0	35.0	41.0
20-24	38.65020526338876	40.0	38.0	41.0	34.2	41.0
25-29	38.31712098950211	40.0	38.0	41.0	33.8	41.0
30-34	38.28106493384846	40.0	38.0	41.0	33.6	41.0
35-39	37.99921832477628	40.0	37.4	41.0	33.0	41.0
40-44	37.90184685066919	40.0	37.0	41.0	33.0	41.0
45-49	37.5434437553759	39.6	36.2	41.0	32.2	41.0
50-54	36.941706643214594	39.0	35.0	40.6	31.0	41.0
55-59	36.25634387689722	37.8	34.8	40.0	30.2	41.0
60-64	35.43363508535058	36.6	34.0	39.8	29.2	41.0
65-69	34.50693969570462	35.4	33.4	38.8	28.0	40.4
70-74	33.433840462606774	35.0	32.4	37.4	26.2	39.6
75-79	32.38826274228639	34.6	31.6	36.0	26.0	38.6
80-84	31.76694541085996	34.4	31.4	35.0	24.6	36.8
85-89	30.53587916506056	34.0	31.0	35.0	19.8	36.0
90	29.489992289689066	34.0	30.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	1.0
11	12.0
12	119.0
13	858.0
14	4074.0
15	10758.0
16	18946.0
17	26946.0
18	34706.0
19	42484.0
20	51227.0
21	60487.0
22	70892.0
23	84183.0
24	101640.0
25	127351.0
26	161884.0
27	207963.0
28	266621.0
29	340465.0
30	429144.0
31	538320.0
32	680706.0
33	881949.0
34	1199560.0
35	1744890.0
36	2709038.0
37	3958358.0
38	4323733.0
39	2093672.0
40	27939.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	27.82295602928838	12.811333627962243	10.310150409034431	49.055559933714946
2	22.63592111243685	19.398079920239063	35.29295739597653	22.673041571347564
3	25.9515926737887	21.735427913345493	22.88873180682973	29.424247606036086
4	27.994127014475918	28.318951215525022	19.355771688059058	24.331150081940002
5	29.33900340433976	30.312981028098328	21.141408324522633	19.206607243039283
6	23.96137299577215	33.18794771563597	21.599267208563468	21.251412080028416
7	21.30918247831593	18.769101881951546	37.655234738718285	22.266480901014244
8	21.501474880397105	21.97448022731506	29.17955142763531	27.344493464652526
9	21.764617584123037	20.91167124430279	31.384233003279483	25.939478168294688
10-14	24.673106877068612	26.280812158032564	24.636529684796113	24.409551280102715
15-19	25.076166920954112	25.103249549010677	25.067719937188738	24.75286359284647
20-24	24.855429442139645	25.34768630767794	25.38075737294151	24.4161268772409
25-29	24.74940241564198	25.3732671281417	25.302085454030987	24.575245002185333
30-34	24.801955217840423	25.291037915214293	25.262966646352048	24.64404022059324
35-39	24.771757226119217	25.426886355041983	25.218644882268144	24.582711536570663
40-44	24.74328246826684	25.2588855371089	25.391172977252225	24.606659017372035
45-49	24.67874100228005	25.318456303612543	25.31882167867901	24.6839810154284
50-54	24.71438651643993	25.411212848876865	25.33953133271016	24.53486930197305
55-59	24.751890494989805	25.31953234685914	25.295245322953203	24.63333183519785
60-64	24.642419566507602	25.359364686950652	25.405238417650367	24.59297732889138
65-69	24.675867458808305	25.452420137657906	25.392941689485966	24.47877071404783
70-74	24.713869415190164	25.403887726454403	25.29741000830148	24.584832850053953
75-79	24.70826499399649	25.351510688443753	25.38223201369435	24.557992303865415
80-84	24.615044823787656	25.479025587165644	25.396037514335873	24.50989207471083
85-89	24.70907015337142	25.4874046834278	25.286578591533825	24.516946571666953
90	24.437701532562137	25.57391557528646	25.47960238350477	24.508780508646637
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.87851596300332
2	45.308962683784415
3	55.375840279824786
4	52.325277096415924
5	48.54561064737904
6	45.21278507580057
7	43.57566337933017
8	48.845968345049634
9	47.70409575241773
10-14	49.08265815717133
15-19	49.82903051380059
20-24	49.271556319380544
25-29	49.324647417827315
30-34	49.44599543843366
35-39	49.354468762689876
40-44	49.34994148563888
45-49	49.36272201770846
50-54	49.249255818412976
55-59	49.38522233018766
60-64	49.23539689539898
65-69	49.15463817285614
70-74	49.29870226524412
75-79	49.266257297861905
80-84	49.12493689849849
85-89	49.22601672503838
90	48.946482041208775
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	2.0
1	2.5
2	4.5
3	4.0
4	3.0
5	5.0
6	5.0
7	9.0
8	24.5
9	35.5
10	36.0
11	51.5
12	102.0
13	176.0
14	309.0
15	545.0
16	960.5
17	1705.0
18	3016.5
19	5392.5
20	6928.0
21	9395.0
22	15995.0
23	26022.5
24	39847.5
25	58838.0
26	83520.5
27	113475.0
28	146308.5
29	182190.0
30	201570.0
31	220073.0
32	258578.0
33	302551.5
34	351483.0
35	398890.0
36	446216.5
37	501119.5
38	549423.5
39	587343.5
40	606983.0
41	620006.5
42	647919.0
43	673062.5
44	688545.5
45	697159.5
46	698696.0
47	695450.5
48	695721.0
49	696599.5
50	695811.0
51	688459.0
52	681883.5
53	672588.5
54	666344.0
55	667229.0
56	657728.0
57	641437.0
58	619392.5
59	592596.0
60	578112.0
61	561862.5
62	528197.0
63	485619.0
64	435638.5
65	384941.0
66	334565.5
67	283346.0
68	234324.5
69	189105.0
70	166184.0
71	146036.0
72	109251.0
73	78878.0
74	53088.0
75	32529.5
76	18870.5
77	10172.0
78	4749.0
79	1963.5
80	1057.0
81	739.0
82	291.5
83	132.0
84	70.5
85	34.5
86	26.5
87	20.5
88	13.5
89	7.0
90	5.0
91	6.0
92	5.5
93	2.0
94	0.5
95	0.5
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.17678662717017726
2	0.0524681361771413
3	0.0
4	0.0
5	9.901516545978732E-6
6	0.0
7	0.0
8	0.0
9	0.0
10-14	0.0
15-19	0.0
20-24	0.0
25-29	9.297524036674029E-4
30-34	0.0016723661446158078
35-39	0.0036635611220121305
40-44	0.00315165271658503
45-49	0.002492211714622847
50-54	0.013097726087020665
55-59	0.002405078369018234
60-64	9.901516545978732E-6
65-69	6.435985754886177E-5
70-74	0.00537256287784806
75-79	0.002864508736751647
80-84	5.931008411041261E-4
85-89	7.73308442240939E-4
90	0.0013218524588881609
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.0198926E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	54.159486884932036
#Duplication Level	Relative count
1	100.0
2	31.15798266680589
3	16.0843688002506
4	9.831888900490759
5	6.613762138456719
6	4.966064529602172
7	3.797640179596951
8	3.1920225540357103
9	2.5227106609585466
10++	30.667223556437296
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCTGG	4241975	2.5699923	5.820012	1
GAAGA	4277325	2.5201778	5.127085	2
CTTCT	4351185	2.518289	5.2310543	1
AAGAA	4315100	2.4960196	5.1708426	2
CTGGA	4043280	2.4103475	8.423991	1
TCCAG	3926125	2.3352106	5.0867095	2
CTCCT	3898885	2.3034956	6.5035357	1
CTGGG	3688200	2.2395568	7.8076234	1
CAGGA	3702960	2.2173073	5.4892855	1
CTTCA	3777475	2.1959915	5.495626	1
CTCCA	3646960	2.164258	7.121756	1
CCCAG	3544105	2.1518772	6.738333	1
CAGAA	3517810	2.0679855	5.058716	1
CTCTG	3377855	2.0001929	5.946408	1
CTGGC	3117790	1.8889072	5.079554	1
TGGAA	3130240	1.8361388	5.2189007	2
CTGAA	3119460	1.8256751	5.176758	1
CTCAG	2901930	1.7260321	5.9134398	1
CTTTG	2916465	1.6917597	5.013183	1
CTTGG	2743965	1.6285208	5.2102404	1
>>END_MODULE
